图片显示不正确RESOURCES

    图片显示不正确Popular resources

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    PGA

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    图片显示不正确 visits:35 图片显示不正确 图片显示不正确PGA

    图片显示不正确What's it?

    A pipeline with an R package, assigned as a PGA utility, was developed that enables automated treatment to the tandem mass spectrometry (MS/MS) data acquired from different MS platforms and construction of customized protein databases based on RNA-Seq data with or without a reference genome guide. PGA can identify novel peptides (SNV, INDEL, novel splice junction and transcript-derived peptides ) and generate an HTML-based report with a visualized interface.

    图片显示不正确Link

    图片显示不正确https://www.bioconductor.org/packages/devel/bioc/html/PGA.html

    图片显示不正确How to use it?

    The pipeline of PGA, aimed at being platform-independent and easy-to-use, was successfully developed and shown to be capable of identifying novel peptides by searching the customized protein database derived from RNA-Seq data.The software is freely available from http://bioconductor.org/packages/PGA/, and the example reports are available at http://wenbostar.github.io/PGA/.

    图片显示不正确Institute

    Shenzhen Huada Gene Research Institute (深圳华大基因研究院)

    图片显示不正确Author

    Shaohang Xu（许少行）,Bo Wen(闻博)

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    xushaoxing@genomics.cn

    图片显示不正确Publication

    BMC Bioinformatics,2016,17:244

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    图片显示不正确Funding source

    [{"id":"1","name":"CNHPP int'l project 3：2014DFB30020（中国人类蛋白质组学数据的知识发现）"}]